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plecb plectin b [ Ictalurus furcatus (blue catfish) ]

Gene ID: 128612994, updated on 10-Jul-2024

Summary

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Gene symbol
plecb
Gene description
plectin b
See related
EnsemblRapid:ENSIFRG00005031478
Gene type
protein coding
RefSeq status
MODEL
Organism
Ictalurus furcatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Siluriformes; Ictaluridae; Ictalurus
Orthologs
zebrafish all
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Genomic context

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See plecb in Genome Data Viewer
Location:
chromosome: 1
Exon count:
39
Annotation release Status Assembly Chr Location
RS_2023_03 current Billie_1.0 (GCF_023375685.1) 1 NC_071255.1 (24538801..24648702)

Chromosome 1 - NC_071255.1Genomic Context describing neighboring genes Neighboring gene eukaryotic translation initiation factor 3, subunit E, a Neighboring gene R-spondin 2 Neighboring gene microtubule actin crosslinking factor 1b Neighboring gene solute carrier family 52 member 3-2b

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_071255.1 Chromosome 1 Reference Billie_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ankyrin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables cadherin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables structural constituent of cytoskeleton IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables structural constituent of muscle IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in hemidesmosome assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in intermediate filament cytoskeleton organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in wound healing IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoskeleton IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in focal adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in hemidesmosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in intermediate filament IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in perinuclear region of cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in sarcolemma IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
plectin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_023375685.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Billie_1.0 Primary Assembly

Genomic

  1. NC_071255.1 Reference Billie_1.0 Primary Assembly

    Range
    24538801..24648702
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_053633556.1 → XP_053489531.1  plectin isoform X7

    Related
    ENSIFRP00005064105.1, ENSIFRT00005081161.1

  2. XM_053633562.1 → XP_053489537.1  plectin isoform X8

    Related
    ENSIFRP00005064029.1, ENSIFRT00005081085.1

  3. XM_053633568.1 → XP_053489543.1  plectin isoform X9

  4. XM_053633576.1 → XP_053489551.1  plectin isoform X10

  5. XM_053633521.1 → XP_053489496.1  plectin isoform X3

  6. XM_053633506.1 → XP_053489481.1  plectin isoform X1

    Related
    ENSIFRP00005064104.1, ENSIFRT00005081160.1

  7. XM_053633514.1 → XP_053489489.1  plectin isoform X2

  8. XM_053633530.1 → XP_053489505.1  plectin isoform X4

  9. XM_053633539.1 → XP_053489514.1  plectin isoform X5

    Related
    ENSIFRP00005064099.1, ENSIFRT00005081155.1

  10. XM_053633548.1 → XP_053489523.1  plectin isoform X6

Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases