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hcfc1b host cell factor C1b [ Ictalurus furcatus (blue catfish) ]

Gene ID: 128608187, updated on 10-Jul-2024

Summary

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Gene symbol
hcfc1b
Gene description
host cell factor C1b
See related
EnsemblRapid:ENSIFRG00005008956
Gene type
protein coding
RefSeq status
MODEL
Organism
Ictalurus furcatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Siluriformes; Ictaluridae; Ictalurus
Orthologs
zebrafish all
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Genomic context

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See hcfc1b in Genome Data Viewer
Location:
chromosome: 5
Exon count:
29
Annotation release Status Assembly Chr Location
RS_2023_03 current Billie_1.0 (GCF_023375685.1) 5 NC_071259.1 (30409381..30432309)

Chromosome 5 - NC_071259.1Genomic Context describing neighboring genes Neighboring gene methyl CpG binding protein 2 Neighboring gene interleukin-1 receptor-associated kinase 1 Neighboring gene cyclin-dependent kinase 20 Neighboring gene GATA binding protein 1b

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_071259.1 Chromosome 5 Reference Billie_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transcription coactivator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chromatin remodeling IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of histone methyltransferase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
host cell factor 1b

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_023375685.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Billie_1.0 Primary Assembly

Genomic

  1. NC_071259.1 Reference Billie_1.0 Primary Assembly

    Range
    30409381..30432309
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_053625726.1 → XP_053481701.1  host cell factor 1b isoform X4

    Related
    ENSIFRP00005024826.1, ENSIFRT00005026425.1

  2. XM_053625721.1 → XP_053481696.1  host cell factor 1b isoform X1

  3. XM_053625723.1 → XP_053481698.1  host cell factor 1b isoform X2

  4. XM_053625724.1 → XP_053481699.1  host cell factor 1b isoform X3

  5. XM_053625725.1 → XP_053481700.1  host cell factor 1b isoform X4

    Related
    ENSIFRP00005024978.1, ENSIFRT00005026577.1

RNA

  1. XR_008386015.1 RNA Sequence

  2. XR_008386016.1 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version

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Molecular Biology Databases