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zgc:112962 uncharacterized LOC128607961 [ Ictalurus furcatus (blue catfish) ]

Gene ID: 128607961, updated on 10-Jul-2024

Summary

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Gene symbol
zgc:112962
Gene description
uncharacterized LOC128607961
See related
EnsemblRapid:ENSIFRG00005010934
Gene type
protein coding
RefSeq status
MODEL
Organism
Ictalurus furcatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Siluriformes; Ictaluridae; Ictalurus
Orthologs
zebrafish all
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Genomic context

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See zgc:112962 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2023_03 current Billie_1.0 (GCF_023375685.1) 5 NC_071259.1 (22206407..22215146)

Chromosome 5 - NC_071259.1Genomic Context describing neighboring genes Neighboring gene transmembrane and coiled-coil domains 1 Neighboring gene aldehyde dehydrogenase 9 family, member A1a, tandem duplicate 1 Neighboring gene torsin-1A-interacting protein 2 Neighboring gene uncharacterized LOC128607966

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_071259.1 Chromosome 5 Reference Billie_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATPase activator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in membrane organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
torsin-1A-interacting protein 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_023375685.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Billie_1.0 Primary Assembly

Genomic

  1. NC_071259.1 Reference Billie_1.0 Primary Assembly

    Range
    22206407..22215146
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_053625266.1 → XP_053481241.1  torsin-1A-interacting protein 2 isoform X2

  2. XM_053625265.1 → XP_053481240.1  torsin-1A-interacting protein 2 isoform X1

  3. XM_053625264.1 → XP_053481239.1  torsin-1A-interacting protein 2 isoform X1

    Related
    ENSIFRP00005028303.1, ENSIFRT00005030289.1
Nucleotide Protein Strain
Heading Accession and Version

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