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capn3a calpain 3a, (p94) [ Pleuronectes platessa (European plaice) ]

Gene ID: 128450708, updated on 25-Mar-2024

Summary

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Gene symbol
capn3a
Gene description
calpain 3a, (p94)
See related
EnsemblRapid:ENSOESG00000028363
Gene type
protein coding
RefSeq status
MODEL
Organism
Pleuronectes platessa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Pleuronectiformes; Pleuronectoidei; Pleuronectidae; Pleuronectes
Orthologs
human zebrafish all
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Genomic context

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See capn3a in Genome Data Viewer
Location:
chromosome: 11
Exon count:
21
Annotation release Status Assembly Chr Location
RS_2023_03 current fPlePla1.1 (GCF_947347685.1) 11 NC_070636.1 (3658040..3669180, complement)

Chromosome 11 - NC_070636.1Genomic Context describing neighboring genes Neighboring gene proton activated chloride channel 1 Neighboring gene zinc finger protein 106a Neighboring gene transmembrane protein 87A Neighboring gene glucosidase, alpha; neutral C

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_070636.1 Chromosome 11 Reference fPlePla1.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables calcium-dependent cysteine-type endopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of apoptotic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in proteolysis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
calpain-3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_947347685.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fPlePla1.1

Genomic

  1. NC_070636.1 Reference fPlePla1.1

    Range
    3658040..3669180 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_053434319.1 → XP_053290294.1  calpain-3 isoform X2

    Related
    ENSOESP00000042826.1, ENSOEST00000051018.1

  2. XM_053434317.1 → XP_053290292.1  calpain-3 isoform X1

    Related
    ENSOESP00000042805.1, ENSOEST00000050997.1
Nucleotide Protein
Heading Accession and Version

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