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trmt1 tRNA methyltransferase 1 [ Pleuronectes platessa (European plaice) ]

Gene ID: 128436972, updated on 25-Mar-2024

Summary

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Gene symbol
trmt1
Gene description
tRNA methyltransferase 1
See related
EnsemblRapid:ENSOESG00000003206
Gene type
protein coding
RefSeq status
MODEL
Organism
Pleuronectes platessa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Pleuronectiformes; Pleuronectoidei; Pleuronectidae; Pleuronectes
Orthologs
human zebrafish all
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Genomic context

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See trmt1 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
16
Annotation release Status Assembly Chr Location
RS_2023_03 current fPlePla1.1 (GCF_947347685.1) 3 NC_070628.1 (2736308..2744635, complement)

Chromosome 3 - NC_070628.1Genomic Context describing neighboring genes Neighboring gene E3 ubiquitin/ISG15 ligase TRIM25 Neighboring gene mannosidase, alpha, class 2B, member 1 Neighboring gene nucleus accumbens associated 1, BEN and BTB (POZ) domain containing b Neighboring gene syntaxin-10

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_070628.1 Chromosome 3 Reference fPlePla1.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in tRNA N2-guanine methylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
tRNA (guanine(26)-N(2))-dimethyltransferase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_947347685.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fPlePla1.1

Genomic

  1. NC_070628.1 Reference fPlePla1.1

    Range
    2736308..2744635 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_053418918.1 → XP_053274893.1  tRNA (guanine(26)-N(2))-dimethyltransferase isoform X2

    Related
    ENSOESP00000006085.1, ENSOEST00000006213.1

  2. XM_053418917.1 → XP_053274892.1  tRNA (guanine(26)-N(2))-dimethyltransferase isoform X1

  3. XM_053418916.1 → XP_053274891.1  tRNA (guanine(26)-N(2))-dimethyltransferase isoform X1

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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