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SGPP1 sphingosine-1-phosphate phosphatase 1 [ Podarcis raffonei (Aeolian wall lizard) ]

Gene ID: 128422385, updated on 25-Mar-2024

Summary

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Gene symbol
SGPP1
Gene description
sphingosine-1-phosphate phosphatase 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Podarcis raffonei
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Lepidosauria; Squamata; Bifurcata; Unidentata; Episquamata; Laterata; Lacertibaenia; Lacertidae; Podarcis
Orthologs
human mouse all
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Genomic context

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See SGPP1 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2023_02 current rPodRaf1.pri (GCF_027172205.1) 1 NC_070602.1 (10405754..10423566, complement)

Chromosome 1 - NC_070602.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC128422828 Neighboring gene 5S ribosomal RNA Neighboring gene WD repeat domain 89 Neighboring gene spectrin repeat containing nuclear envelope protein 2 Neighboring gene estrogen receptor 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_070602.1 Chromosome 1 Reference rPodRaf1.pri

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables sphingosine-1-phosphate phosphatase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in phospholipid dephosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in sphingosine metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
sphingosine-1-phosphate phosphatase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_027172205.1-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference rPodRaf1.pri

Genomic

  1. NC_070602.1 Reference rPodRaf1.pri

    Range
    10405754..10423566 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_053406461.1 → XP_053262436.1  sphingosine-1-phosphate phosphatase 1

  2. XM_053406380.1 → XP_053262355.1  sphingosine-1-phosphate phosphatase 1

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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