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ATRNL1 attractin like 1 [ Podarcis raffonei (Aeolian wall lizard) ]

Gene ID: 128414206, updated on 25-Mar-2024

Summary

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Gene symbol
ATRNL1
Gene description
attractin like 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Podarcis raffonei
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Lepidosauria; Squamata; Bifurcata; Unidentata; Episquamata; Laterata; Lacertibaenia; Lacertidae; Podarcis
Orthologs
human mouse all
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Genomic context

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See ATRNL1 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
30
Annotation release Status Assembly Chr Location
RS_2023_02 current rPodRaf1.pri (GCF_027172205.1) 5 NC_070606.1 (51023423..51521548, complement)

Chromosome 5 - NC_070606.1Genomic Context describing neighboring genes Neighboring gene GDNF family receptor alpha 1 Neighboring gene uncharacterized LOC128414214 Neighboring gene uncharacterized LOC128414213 Neighboring gene uncharacterized LOC128414210 Neighboring gene uncharacterized LOC128414212 Neighboring gene TruB pseudouridine synthase family member 1 Neighboring gene FHF complex subunit HOOK interacting protein 2A

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_070606.1 Chromosome 5 Reference rPodRaf1.pri

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
attractin-like protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_027172205.1-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference rPodRaf1.pri

Genomic

  1. NC_070606.1 Reference rPodRaf1.pri

    Range
    51023423..51521548 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_053389095.1 → XP_053245070.1  attractin-like protein 1 isoform X3

  2. XM_053389093.1 → XP_053245068.1  attractin-like protein 1 isoform X1

  3. XM_053389094.1 → XP_053245069.1  attractin-like protein 1 isoform X2

  4. XM_053389096.1 → XP_053245071.1  attractin-like protein 1 isoform X4

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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