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BCAN brevican [ Podarcis raffonei (Aeolian wall lizard) ]

Gene ID: 128404438, updated on 25-Mar-2024

Summary

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Gene symbol
BCAN
Gene description
brevican
Gene type
protein coding
RefSeq status
MODEL
Organism
Podarcis raffonei
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Lepidosauria; Squamata; Bifurcata; Unidentata; Episquamata; Laterata; Lacertibaenia; Lacertidae; Podarcis
Orthologs
human mouse all
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Genomic context

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See BCAN in Genome Data Viewer
Location:
chromosome: 16
Exon count:
21
Annotation release Status Assembly Chr Location
RS_2023_02 current rPodRaf1.pri (GCF_027172205.1) 16 NC_070617.1 (17301133..17348447)

Chromosome 16 - NC_070617.1Genomic Context describing neighboring genes Neighboring gene pyruvate carboxylase Neighboring gene leucine rich repeat and fibronectin type III domain containing 4 Neighboring gene uncharacterized LOC128404143 Neighboring gene hyaluronan and proteoglycan link protein 2 Neighboring gene Rh family B glycoprotein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_070617.1 Chromosome 16 Reference rPodRaf1.pri

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables hyaluronic acid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
brevican core protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_027172205.1-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference rPodRaf1.pri

Genomic

  1. NC_070617.1 Reference rPodRaf1.pri

    Range
    17301133..17348447
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_053370081.1 → XP_053226056.1  brevican core protein isoform X4

  2. XM_053370080.1 → XP_053226055.1  brevican core protein isoform X4

  3. XM_053370087.1 → XP_053226062.1  brevican core protein isoform X4

  4. XM_053370086.1 → XP_053226061.1  brevican core protein isoform X4

  5. XM_053370077.1 → XP_053226052.1  brevican core protein isoform X1

  6. XM_053370078.1 → XP_053226053.1  brevican core protein isoform X2

  7. XM_053370079.1 → XP_053226054.1  brevican core protein isoform X3

  8. XM_053370088.1 → XP_053226063.1  brevican core protein isoform X5

  9. XM_053370084.1 → XP_053226059.1  brevican core protein isoform X4

  10. XM_053370085.1 → XP_053226060.1  brevican core protein isoform X4

  11. XM_053370083.1 → XP_053226058.1  brevican core protein isoform X4

Nucleotide Protein
Heading Accession and Version

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