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MMP17 matrix metallopeptidase 17 [ Podarcis raffonei (Aeolian wall lizard) ]

Gene ID: 128403434, updated on 25-Mar-2024

Summary

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Gene symbol
MMP17
Gene description
matrix metallopeptidase 17
Gene type
protein coding
RefSeq status
MODEL
Organism
Podarcis raffonei
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Lepidosauria; Squamata; Bifurcata; Unidentata; Episquamata; Laterata; Lacertibaenia; Lacertidae; Podarcis
Orthologs
human mouse all
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Genomic context

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See MMP17 in Genome Data Viewer
Location:
chromosome: 16
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2023_02 current rPodRaf1.pri (GCF_027172205.1) 16 NC_070617.1 (34038517..34197337, complement)

Chromosome 16 - NC_070617.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC128403951 Neighboring gene unc-51 like autophagy activating kinase 1 Neighboring gene transfer RNA methionine (anticodon CAU) Neighboring gene splicing factor SWAP Neighboring gene adhesion G protein-coupled receptor D1 Neighboring gene uncharacterized LOC128403864

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_070617.1 Chromosome 16 Reference rPodRaf1.pri

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables metalloendopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in collagen catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in extracellular matrix organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in proteolysis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular matrix IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
matrix metalloproteinase-17

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_027172205.1-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference rPodRaf1.pri

Genomic

  1. NC_070617.1 Reference rPodRaf1.pri

    Range
    34038517..34197337 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_053368199.1 → XP_053224174.1  matrix metalloproteinase-17

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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