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tlr18 toll-like receptor 18 [ Scomber japonicus (chub mackerel) ]

Gene ID: 128366894, updated on 25-Mar-2024

Summary

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Gene symbol
tlr18
Gene description
toll-like receptor 18
Gene type
protein coding
RefSeq status
MODEL
Organism
Scomber japonicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Pelagiaria; Scombriformes; Scombridae; Scomber
Orthologs
zebrafish all
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Genomic context

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See tlr18 in Genome Data Viewer
Location:
chromosome: 10
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2023_02 current fScoJap1.pri (GCF_027409825.1) 10 NC_070587.1 (30670993..30684380)

Chromosome 10 - NC_070587.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC128366267 Neighboring gene leucine rich repeat and Ig domain containing 4b Neighboring gene PR domain containing 1a, with ZNF domain Neighboring gene ATG5 autophagy related 5 homolog (S. cerevisiae) Neighboring gene dynactin 3 (p22)

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_070587.1 Chromosome 10 Reference fScoJap1.pri

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transmembrane signaling receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in immune response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in inflammatory response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in toll-like receptor signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
toll-like receptor 18

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_027409825.1-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fScoJap1.pri

Genomic

  1. NC_070587.1 Reference fScoJap1.pri

    Range
    30670993..30684380
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_053327658.1 → XP_053183633.1  toll-like receptor 18

Nucleotide Protein
Heading Accession and Version

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Molecular Biology Databases