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hcfc1a host cell factor C1a [ Scomber japonicus (chub mackerel) ]

Gene ID: 128355069, updated on 25-Mar-2024

Summary

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Gene symbol
hcfc1a
Gene description
host cell factor C1a
Gene type
protein coding
RefSeq status
MODEL
Organism
Scomber japonicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Pelagiaria; Scombriformes; Scombridae; Scomber
Orthologs
zebrafish all
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Genomic context

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See hcfc1a in Genome Data Viewer
Location:
chromosome: 3
Exon count:
28
Annotation release Status Assembly Chr Location
RS_2023_02 current fScoJap1.pri (GCF_027409825.1) 3 NC_070580.1 (11969736..11983759, complement)

Chromosome 3 - NC_070580.1Genomic Context describing neighboring genes Neighboring gene GATA binding protein 1a Neighboring gene uncharacterized LOC128355071 Neighboring gene opsin 1 (cone pigments), short-wave-sensitive 2 Neighboring gene blue-sensitive opsin-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_070580.1 Chromosome 3 Reference fScoJap1.pri

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transcription coactivator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chromatin remodeling IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of histone methyltransferase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
host cell factor 1a

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_027409825.1-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fScoJap1.pri

Genomic

  1. NC_070580.1 Reference fScoJap1.pri

    Range
    11969736..11983759 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_053315239.1 → XP_053171214.1  host cell factor 1a

Nucleotide Protein
Heading Accession and Version

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