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SGPL1 sphingosine-1-phosphate lyase 1 [ Hemicordylus capensis (graceful crag lizard) ]

Gene ID: 128349560, updated on 25-Mar-2024

Summary

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Gene symbol
SGPL1
Gene description
sphingosine-1-phosphate lyase 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Hemicordylus capensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Lepidosauria; Squamata; Bifurcata; Unidentata; Scinciformata; Cordyloidea; Cordylidae; Hemicordylus
Orthologs
human mouse all
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Genomic context

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See SGPL1 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
17
Annotation release Status Assembly Chr Location
RS_2023_02 current rHemCap1.1.pri (GCF_027244095.1) 3 NC_069659.1 (234841077..234901946, complement)

Chromosome 3 - NC_069659.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC128348759 Neighboring gene pterin-4 alpha-carbinolamine dehydratase 1 Neighboring gene thymus, brain and testes associated Neighboring gene ADAM metallopeptidase with thrombospondin type 1 motif 14 Neighboring gene phosphatase domain containing paladin 1 Neighboring gene uncharacterized LOC128349824

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_069659.1 Chromosome 3 Reference rHemCap1.1.pri

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables pyridoxal phosphate binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables sphinganine-1-phosphate aldolase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carboxylic acid metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in sphingolipid catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
sphingosine-1-phosphate lyase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_027244095.1-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference rHemCap1.1.pri

Genomic

  1. NC_069659.1 Reference rHemCap1.1.pri

    Range
    234841077..234901946 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_053306049.1 → XP_053162024.1  sphingosine-1-phosphate lyase 1 isoform X3

  2. XM_053306046.1 → XP_053162021.1  sphingosine-1-phosphate lyase 1 isoform X1

  3. XM_053306050.1 → XP_053162025.1  sphingosine-1-phosphate lyase 1 isoform X4

  4. XM_053306048.1 → XP_053162023.1  sphingosine-1-phosphate lyase 1 isoform X2

Nucleotide Protein
Heading Accession and Version

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