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SGCD sarcoglycan delta [ Hemicordylus capensis (graceful crag lizard) ]

Gene ID: 128345772, updated on 25-Mar-2024

Summary

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Gene symbol
SGCD
Gene description
sarcoglycan delta
Gene type
protein coding
RefSeq status
MODEL
Organism
Hemicordylus capensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Lepidosauria; Squamata; Bifurcata; Unidentata; Scinciformata; Cordyloidea; Cordylidae; Hemicordylus
Orthologs
human mouse all
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Genomic context

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See SGCD in Genome Data Viewer
Location:
chromosome: 2
Exon count:
13
Annotation release Status Assembly Chr Location
RS_2023_02 current rHemCap1.1.pri (GCF_027244095.1) 2 NC_069658.1 (335632456..336252826, complement)

Chromosome 2 - NC_069658.1Genomic Context describing neighboring genes Neighboring gene hepatitis A virus cellular receptor 2 homolog Neighboring gene uncharacterized LOC128347314 Neighboring gene uncharacterized LOC128345773 Neighboring gene uncharacterized LOC128341779 Neighboring gene uncharacterized LOC128348193

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_069658.1 Chromosome 2 Reference rHemCap1.1.pri

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cardiac muscle tissue development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in heart contraction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of sarcoglycan complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in sarcolemma IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
delta-sarcoglycan

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_027244095.1-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference rHemCap1.1.pri

Genomic

  1. NC_069658.1 Reference rHemCap1.1.pri

    Range
    335632456..336252826 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_053298220.1 → XP_053154195.1  delta-sarcoglycan

  2. XM_053298224.1 → XP_053154199.1  delta-sarcoglycan

  3. XM_053298221.1 → XP_053154196.1  delta-sarcoglycan

  4. XM_053298223.1 → XP_053154198.1  delta-sarcoglycan

  5. XM_053298219.1 → XP_053154194.1  delta-sarcoglycan

  6. XM_053298222.1 → XP_053154197.1  delta-sarcoglycan

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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