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CAPN3 calpain 3 [ Hemicordylus capensis (graceful crag lizard) ]

Gene ID: 128340139, updated on 25-Mar-2024

Summary

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Gene symbol
CAPN3
Gene description
calpain 3
Gene type
protein coding
RefSeq status
MODEL
Organism
Hemicordylus capensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Lepidosauria; Squamata; Bifurcata; Unidentata; Scinciformata; Cordyloidea; Cordylidae; Hemicordylus
Orthologs
human mouse all
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Genomic context

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See CAPN3 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
24
Annotation release Status Assembly Chr Location
RS_2023_02 current rHemCap1.1.pri (GCF_027244095.1) 1 NC_069657.1 (74246967..74295688)

Chromosome 1 - NC_069657.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC128335579 Neighboring gene transmembrane protein 87A Neighboring gene uncharacterized LOC128340578 Neighboring gene glucosidase alpha, neutral C Neighboring gene uncharacterized LOC128340140 Neighboring gene uncharacterized LOC128340918 Neighboring gene zinc finger protein 106 Neighboring gene synaptosome associated protein 23

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_069657.1 Chromosome 1 Reference rHemCap1.1.pri

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables calcium-dependent cysteine-type endopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of apoptotic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in proteolysis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
calpain-3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_027244095.1-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference rHemCap1.1.pri

Genomic

  1. NC_069657.1 Reference rHemCap1.1.pri

    Range
    74246967..74295688
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_053284929.1 → XP_053140904.1  calpain-3 isoform X1

  2. XM_053284930.1 → XP_053140905.1  calpain-3 isoform X2

  3. XM_053284932.1 → XP_053140907.1  calpain-3 isoform X3

  4. XM_053284933.1 → XP_053140908.1  calpain-3 isoform X4

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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