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SPTLC2 serine palmitoyltransferase long chain base subunit 2 [ Hemicordylus capensis (graceful crag lizard) ]

Gene ID: 128339365, updated on 19-Jun-2024

Summary

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Gene symbol
SPTLC2
Gene description
serine palmitoyltransferase long chain base subunit 2
Gene type
protein coding
RefSeq status
MODEL
Organism
Hemicordylus capensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Lepidosauria; Squamata; Bifurcata; Unidentata; Scinciformata; Cordyloidea; Cordylidae; Hemicordylus
Orthologs
human mouse all
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Genomic context

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See SPTLC2 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
14
Annotation release Status Assembly Chr Location
RS_2023_02 current rHemCap1.1.pri (GCF_027244095.1) 1 NC_069657.1 (46777258..46915441)

Chromosome 1 - NC_069657.1Genomic Context describing neighboring genes Neighboring gene aarF domain containing kinase 1 Neighboring gene SNW domain containing 1 Neighboring gene SRA stem-loop interacting RNA binding protein Neighboring gene alkB homolog 1, histone H2A dioxygenase Neighboring gene isthmin 2 Neighboring gene activator of HSP90 ATPase activity 1 Neighboring gene VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_069657.1 Chromosome 1 Reference rHemCap1.1.pri

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables pyridoxal phosphate binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables serine C-palmitoyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in ceramide biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in sphingosine biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of serine palmitoyltransferase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
serine palmitoyltransferase 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_027244095.1-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference rHemCap1.1.pri

Genomic

  1. NC_069657.1 Reference rHemCap1.1.pri

    Range
    46777258..46915441
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_053283134.1 → XP_053139109.1  serine palmitoyltransferase 2 isoform X2

  2. XM_053283133.1 → XP_053139108.1  serine palmitoyltransferase 2 isoform X1

  3. XM_053283135.1 → XP_053139110.1  serine palmitoyltransferase 2 isoform X2

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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