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PIKFYVE phosphoinositide kinase, FYVE-type zinc finger containing [ Hemicordylus capensis (graceful crag lizard) ]

Gene ID: 128339236, updated on 25-Mar-2024

Summary

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Gene symbol
PIKFYVE
Gene description
phosphoinositide kinase, FYVE-type zinc finger containing
Gene type
protein coding
RefSeq status
MODEL
Organism
Hemicordylus capensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Lepidosauria; Squamata; Bifurcata; Unidentata; Scinciformata; Cordyloidea; Cordylidae; Hemicordylus
Orthologs
human mouse all
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Genomic context

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See PIKFYVE in Genome Data Viewer
Location:
chromosome: 1
Exon count:
44
Annotation release Status Assembly Chr Location
RS_2023_02 current rHemCap1.1.pri (GCF_027244095.1) 1 NC_069657.1 (225579762..225701487)

Chromosome 1 - NC_069657.1Genomic Context describing neighboring genes Neighboring gene chromosome 1 C2orf80 homolog Neighboring gene shugoshin 2-like Neighboring gene isocitrate dehydrogenase (NADP(+)) 1 Neighboring gene parathyroid hormone 2 receptor Neighboring gene uncharacterized LOC128339596 Neighboring gene uncharacterized LOC128339308

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_069657.1 Chromosome 1 Reference rHemCap1.1.pri

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 1-phosphatidylinositol-3-phosphate 5-kinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in intracellular signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in phosphatidylinositol metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
1-phosphatidylinositol 3-phosphate 5-kinase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_027244095.1-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference rHemCap1.1.pri

Genomic

  1. NC_069657.1 Reference rHemCap1.1.pri

    Range
    225579762..225701487
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_053282805.1 → XP_053138780.1  1-phosphatidylinositol 3-phosphate 5-kinase isoform X1

  2. XM_053282804.1 → XP_053138779.1  1-phosphatidylinositol 3-phosphate 5-kinase isoform X1

  3. XM_053282803.1 → XP_053138778.1  1-phosphatidylinositol 3-phosphate 5-kinase isoform X1

  4. XM_053282806.1 → XP_053138781.1  1-phosphatidylinositol 3-phosphate 5-kinase isoform X2

  5. XM_053282808.1 → XP_053138783.1  1-phosphatidylinositol 3-phosphate 5-kinase isoform X4

  6. XM_053282807.1 → XP_053138782.1  1-phosphatidylinositol 3-phosphate 5-kinase isoform X3

RNA

  1. XR_008312919.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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