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OTUB1 OTU deubiquitinase, ubiquitin aldehyde binding 1 [ Hemicordylus capensis (graceful crag lizard) ]

Gene ID: 128337479, updated on 25-Mar-2024

Summary

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Gene symbol
OTUB1
Gene description
OTU deubiquitinase, ubiquitin aldehyde binding 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Hemicordylus capensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Lepidosauria; Squamata; Bifurcata; Unidentata; Scinciformata; Cordyloidea; Cordylidae; Hemicordylus
Orthologs
human mouse all
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Genomic context

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See OTUB1 in Genome Data Viewer
Location:
chromosome: 14
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2023_02 current rHemCap1.1.pri (GCF_027244095.1) 14 NC_069670.1 (11695168..11706611, complement)

Chromosome 14 - NC_069670.1Genomic Context describing neighboring genes Neighboring gene stress induced phosphoprotein 1 Neighboring gene mono-ADP ribosylhydrolase 1 Neighboring gene fibronectin leucine rich transmembrane protein 1 Neighboring gene actin, alpha cardiac muscle 1-like Neighboring gene N-alpha-acetyltransferase 40, NatD catalytic subunit Neighboring gene translation initiation factor IF-2-like Neighboring gene REST corepressor 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_069670.1 Chromosome 14 Reference rHemCap1.1.pri

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cysteine-type deubiquitinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ubiquitin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of double-strand break repair IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein K48-linked deubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ubiquitin thioesterase OTUB1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_027244095.1-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference rHemCap1.1.pri

Genomic

  1. NC_069670.1 Reference rHemCap1.1.pri

    Range
    11695168..11706611 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_053278518.1 → XP_053134493.1  ubiquitin thioesterase OTUB1 isoform X3

  2. XM_053278517.1 → XP_053134492.1  ubiquitin thioesterase OTUB1 isoform X2

  3. XM_053278516.1 → XP_053134491.1  ubiquitin thioesterase OTUB1 isoform X1

Nucleotide Protein
Heading Accession and Version

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