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CSGALNACT1 chondroitin sulfate N-acetylgalactosaminyltransferase 1 [ Hemicordylus capensis (graceful crag lizard) ]

Gene ID: 128329111, updated on 25-Mar-2024

Summary

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Gene symbol
CSGALNACT1
Gene description
chondroitin sulfate N-acetylgalactosaminyltransferase 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Hemicordylus capensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Lepidosauria; Squamata; Bifurcata; Unidentata; Scinciformata; Cordyloidea; Cordylidae; Hemicordylus
Orthologs
human mouse all
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Genomic context

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See CSGALNACT1 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2023_02 current rHemCap1.1.pri (GCF_027244095.1) 6 NC_069662.1 (61917601..61977678, complement)

Chromosome 6 - NC_069662.1Genomic Context describing neighboring genes Neighboring gene G3BP stress granule assembly factor 2 Neighboring gene USO1 vesicle transport factor Neighboring gene uncharacterized LOC128329113 Neighboring gene uncharacterized LOC128329114 Neighboring gene SH2 domain containing 4A Neighboring gene integrator complex subunit 10 Neighboring gene heparan-alpha-glucosaminide N-acetyltransferase Neighboring gene protein O-mannose kinase

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_069662.1 Chromosome 6 Reference rHemCap1.1.pri

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glucuronosyl-N-acetylgalactosaminyl-proteoglycan 4-beta-N-acetylgalactosaminyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chondroitin sulfate biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi cisterna membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
chondroitin sulfate N-acetylgalactosaminyltransferase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_027244095.1-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference rHemCap1.1.pri

Genomic

  1. NC_069662.1 Reference rHemCap1.1.pri

    Range
    61917601..61977678 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_053259632.1 → XP_053115607.1  chondroitin sulfate N-acetylgalactosaminyltransferase 1 isoform X3

  2. XM_053259631.1 → XP_053115606.1  chondroitin sulfate N-acetylgalactosaminyltransferase 1 isoform X2

  3. XM_053259628.1 → XP_053115603.1  chondroitin sulfate N-acetylgalactosaminyltransferase 1 isoform X1

  4. XM_053259635.1 → XP_053115610.1  chondroitin sulfate N-acetylgalactosaminyltransferase 1 isoform X4

  5. XM_053259633.1 → XP_053115608.1  chondroitin sulfate N-acetylgalactosaminyltransferase 1 isoform X3

  6. XM_053259630.1 → XP_053115605.1  chondroitin sulfate N-acetylgalactosaminyltransferase 1 isoform X1

  7. XM_053259636.1 → XP_053115611.1  chondroitin sulfate N-acetylgalactosaminyltransferase 1 isoform X5

  8. XM_053259629.1 → XP_053115604.1  chondroitin sulfate N-acetylgalactosaminyltransferase 1 isoform X1

RNA

  1. XR_008309517.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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