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GDPD5 glycerophosphodiester phosphodiesterase domain containing 5 [ Tympanuchus pallidicinctus (lesser prairie-chicken) ]

Gene ID: 128088597, updated on 25-Mar-2024

Summary

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Gene symbol
GDPD5
Gene description
glycerophosphodiester phosphodiesterase domain containing 5
Gene type
protein coding
RefSeq status
MODEL
Organism
Tympanuchus pallidicinctus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Tetraoninae; Tympanuchus
Orthologs
human mouse all
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Genomic context

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See GDPD5 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
24
Annotation release Status Assembly Chr Location
RS_2023_02 current pur_lepc_1.0 (GCF_026119805.1) Unplaced Scaffold NW_026294754.1 (712325..1076683, complement)

NW_026294754.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC128088677 Neighboring gene post-GPI attachment to proteins 2 Neighboring gene ras homolog family member G Neighboring gene nucleoporin 98 and 96 precursor Neighboring gene NAD(P)(+)--arginine ADP-ribosyltransferase 1-like Neighboring gene uncharacterized LOC128088602 Neighboring gene methyl-CpG-binding domain protein 6-like Neighboring gene NAD(P)(+)--arginine ADP-ribosyltransferase 2-like Neighboring gene cholinergic receptor nicotinic alpha 10 subunit Neighboring gene diacylglycerol O-acyltransferase 2 Neighboring gene monoacylglycerol O-acyltransferase 2 Neighboring gene microtubule associated protein 6 Neighboring gene kelch like family member 35 Neighboring gene small nucleolar RNA SNORD15 Neighboring gene serpin family H member 1 Neighboring gene ribosomal protein S3

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_026294754 Unplaced Scaffold Reference pur_lepc_1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glycerophosphodiester phosphodiesterase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in lipid metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of neuron differentiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
glycerophosphodiester phosphodiesterase domain-containing protein 5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_026119805.1-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference pur_lepc_1.0

Genomic

  1. NW_026294754.1 Reference pur_lepc_1.0

    Range
    712325..1076683 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_052699314.1 → XP_052555274.1  glycerophosphodiester phosphodiesterase domain-containing protein 5 isoform X1

  2. XM_052699313.1 → XP_052555273.1  glycerophosphodiester phosphodiesterase domain-containing protein 5 isoform X1

  3. XM_052699315.1 → XP_052555275.1  glycerophosphodiester phosphodiesterase domain-containing protein 5 isoform X1

  4. XM_052699317.1 → XP_052555277.1  glycerophosphodiester phosphodiesterase domain-containing protein 5 isoform X2

  5. XM_052699316.1 → XP_052555276.1  glycerophosphodiester phosphodiesterase domain-containing protein 5 isoform X1

  6. XM_052699318.1 → XP_052555278.1  glycerophosphodiester phosphodiesterase domain-containing protein 5 isoform X3

  7. XM_052699319.1 → XP_052555279.1  glycerophosphodiester phosphodiesterase domain-containing protein 5 isoform X4

RNA

  1. XR_008210304.1 RNA Sequence

  2. XR_008210303.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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