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PKD1L2 polycystin-1-like protein 2 [ Tympanuchus pallidicinctus (lesser prairie-chicken) ]

Gene ID: 128082756, updated on 25-Mar-2024

Summary

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Gene symbol
PKD1L2
Gene description
polycystin-1-like protein 2
Gene type
protein coding
RefSeq status
MODEL
Organism
Tympanuchus pallidicinctus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Tetraoninae; Tympanuchus
Orthologs
human all
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Genomic context

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See PKD1L2 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
43
Annotation release Status Assembly Chr Location
RS_2023_02 current pur_lepc_1.0 (GCF_026119805.1) Unplaced Scaffold NW_026294739.1 (27733632..27766711)

NW_026294739.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC128082067 Neighboring gene gigaxonin Neighboring gene beta-carotene oxygenase 1 Neighboring gene glycine cleavage system protein H Neighboring gene protein phosphatase 1 regulatory subunit 3E

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_026294739 Unplaced Scaffold Reference pur_lepc_1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium channel activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables carbohydrate binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in detection of mechanical stimulus IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
polycystic kidney disease protein 1-like 2
Names
polycystin 1 like 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_026119805.1-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference pur_lepc_1.0

Genomic

  1. NW_026294739.1 Reference pur_lepc_1.0

    Range
    27733632..27766711
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_052687262.1 → XP_052543222.1  polycystic kidney disease protein 1-like 2 isoform X3

  2. XM_052687259.1 → XP_052543219.1  polycystic kidney disease protein 1-like 2 isoform X1

  3. XM_052687261.1 → XP_052543221.1  polycystic kidney disease protein 1-like 2 isoform X2

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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