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LOC128082309 carbohydrate sulfotransferase 6-like [ Tympanuchus pallidicinctus (lesser prairie-chicken) ]

Gene ID: 128082309, updated on 23-Nov-2023

Summary

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Gene symbol
LOC128082309
Gene description
carbohydrate sulfotransferase 6-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Tympanuchus pallidicinctus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Tetraoninae; Tympanuchus
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Genomic context

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See LOC128082309 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2023_02 current pur_lepc_1.0 (GCF_026119805.1) Unplaced Scaffold NW_026294739.1 (23273844..23290856, complement)

NW_026294739.1Genomic Context describing neighboring genes Neighboring gene glycogenin 1 Neighboring gene uncharacterized LOC128082315 Neighboring gene transmembrane protein 231 Neighboring gene GABA type A receptor associated protein like 2 Neighboring gene adenosine deaminase tRNA specific 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_026294739 Unplaced Scaffold Reference pur_lepc_1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables N-acetylglucosamine 6-O-sulfotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in N-acetylglucosamine metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in keratan sulfate biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
carbohydrate sulfotransferase 6-like; uncharacterized protein LOC128082309

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_026119805.1-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference pur_lepc_1.0

Genomic

  1. NW_026294739.1 Reference pur_lepc_1.0

    Range
    23273844..23290856 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_052686360.1 → XP_052542320.1  uncharacterized protein LOC128082309 isoform X3

  2. XM_052686358.1 → XP_052542318.1  carbohydrate sulfotransferase 6-like isoform X2

  3. XM_052686356.1 → XP_052542316.1  carbohydrate sulfotransferase 6-like isoform X1

  4. XM_052686359.1 → XP_052542319.1  carbohydrate sulfotransferase 6-like isoform X2

  5. XM_052686357.1 → XP_052542317.1  carbohydrate sulfotransferase 6-like isoform X2

  6. XM_052686361.1 → XP_052542321.1  carbohydrate sulfotransferase 6-like isoform X4

Nucleotide Protein
Heading Accession and Version

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Molecular Biology Databases