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SGCD sarcoglycan delta [ Tympanuchus pallidicinctus (lesser prairie-chicken) ]

Gene ID: 128081441, updated on 25-Mar-2024

Summary

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Gene symbol
SGCD
Gene description
sarcoglycan delta
Gene type
protein coding
RefSeq status
MODEL
Organism
Tympanuchus pallidicinctus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Tetraoninae; Tympanuchus
Orthologs
human mouse all
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Genomic context

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See SGCD in Genome Data Viewer
Location:
chromosome: Un
Exon count:
13
Annotation release Status Assembly Chr Location
RS_2023_02 current pur_lepc_1.0 (GCF_026119805.1) Unplaced Scaffold NW_026294733.1 (1797862..2112139)

NW_026294733.1Genomic Context describing neighboring genes Neighboring gene gem nuclear organelle associated protein 5 Neighboring gene mitochondrial ribosomal protein L22 Neighboring gene uncharacterized LOC128081463 Neighboring gene uncharacterized LOC128081455 Neighboring gene T-cell immunoglobulin and mucin domain-containing protein 4-like Neighboring gene hepatitis A virus cellular receptor 1 homolog

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_026294733 Unplaced Scaffold Reference pur_lepc_1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cardiac muscle tissue development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in heart contraction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of sarcoglycan complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in sarcolemma IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
delta-sarcoglycan

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_026119805.1-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference pur_lepc_1.0

Genomic

  1. NW_026294733.1 Reference pur_lepc_1.0

    Range
    1797862..2112139
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_052684682.1 → XP_052540642.1  delta-sarcoglycan isoform X3

  2. XM_052684677.1 → XP_052540637.1  delta-sarcoglycan isoform X1

  3. XM_052684680.1 → XP_052540640.1  delta-sarcoglycan isoform X2

  4. XM_052684679.1 → XP_052540639.1  delta-sarcoglycan isoform X1

  5. XM_052684678.1 → XP_052540638.1  delta-sarcoglycan isoform X1

  6. XM_052684681.1 → XP_052540641.1  delta-sarcoglycan isoform X2

Nucleotide Protein
Heading Accession and Version

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