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LOC128080349 bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 3 [ Tympanuchus pallidicinctus (lesser prairie-chicken) ]

Gene ID: 128080349, updated on 23-Nov-2023

Summary

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Gene symbol
LOC128080349
Gene description
bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 3
Gene type
protein coding
RefSeq status
MODEL
Organism
Tympanuchus pallidicinctus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Tetraoninae; Tympanuchus
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Genomic context

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See LOC128080349 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
15
Annotation release Status Assembly Chr Location
RS_2023_02 current pur_lepc_1.0 (GCF_026119805.1) Unplaced Scaffold NW_026294721.1 (35094585..35166389)

NW_026294721.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC128080522 Neighboring gene uncharacterized LOC128080496 Neighboring gene small nucleolar RNA SNORA24 Neighboring gene serine protease 12

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_026294721 Unplaced Scaffold Reference pur_lepc_1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables [heparan sulfate]-glucosamine N-sulfotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables deacetylase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in heparan sulfate proteoglycan biosynthetic process, polysaccharide chain biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_026119805.1-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference pur_lepc_1.0

Genomic

  1. NW_026294721.1 Reference pur_lepc_1.0

    Range
    35094585..35166389
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_052682444.1 → XP_052538404.1  bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 3

  2. XM_052682445.1 → XP_052538405.1  bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 3

Nucleotide Protein
Heading Accession and Version

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