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PKD1 polycystin 1, transient receptor potential channel interacting [ Tympanuchus pallidicinctus (lesser prairie-chicken) ]

Gene ID: 128079395, updated on 25-Mar-2024

Summary

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Gene symbol
PKD1
Gene description
polycystin 1, transient receptor potential channel interacting
Gene type
protein coding
RefSeq status
MODEL
Organism
Tympanuchus pallidicinctus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Tetraoninae; Tympanuchus
Orthologs
human mouse all
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Genomic context

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See PKD1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
47
Annotation release Status Assembly Chr Location
RS_2023_02 current pur_lepc_1.0 (GCF_026119805.1) Unplaced Scaffold NW_026294699.1 (8834197..8919265)

NW_026294699.1Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA SNORD60 Neighboring gene RAB26, member RAS oncogene family Neighboring gene TSC complex subunit 2 Neighboring gene nth like DNA glycosylase 1 Neighboring gene NHERF family PDZ scaffold protein 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_026294699 Unplaced Scaffold Reference pur_lepc_1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in kidney development IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
polycystin-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_026119805.1-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference pur_lepc_1.0

Genomic

  1. NW_026294699.1 Reference pur_lepc_1.0

    Range
    8834197..8919265
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_052680543.1 → XP_052536503.1  polycystin-1 isoform X1

  2. XM_052680544.1 → XP_052536504.1  polycystin-1 isoform X2

Nucleotide Protein
Heading Accession and Version

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