U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

CLEC16A C-type lectin domain containing 16A [ Tympanuchus pallidicinctus (lesser prairie-chicken) ]

Gene ID: 128079331, updated on 25-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
CLEC16A
Gene description
C-type lectin domain containing 16A
Gene type
protein coding
RefSeq status
MODEL
Organism
Tympanuchus pallidicinctus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Tetraoninae; Tympanuchus
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See CLEC16A in Genome Data Viewer
Location:
chromosome: Un
Exon count:
26
Annotation release Status Assembly Chr Location
RS_2023_02 current pur_lepc_1.0 (GCF_026119805.1) Unplaced Scaffold NW_026294699.1 (6178965..6241726)

NW_026294699.1Genomic Context describing neighboring genes Neighboring gene class II major histocompatibility complex transactivator Neighboring gene Dexi homolog Neighboring gene uncharacterized LOC128079311 Neighboring gene suppressor of cytokine signaling 1 Neighboring gene RecQ mediated genome instability 2

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NW_026294699 Unplaced Scaffold Reference pur_lepc_1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in endosomal transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in endosome to lysosome transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of autophagosome maturation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endolysosome membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in late endosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
protein CLEC16A

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: GCF_026119805.1-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference pur_lepc_1.0

Genomic

  1. NW_026294699.1 Reference pur_lepc_1.0

    Range
    6178965..6241726
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_052680392.1 → XP_052536352.1  protein CLEC16A isoform X1

  2. XM_052680395.1 → XP_052536355.1  protein CLEC16A isoform X3

  3. XM_052680399.1 → XP_052536359.1  protein CLEC16A isoform X5

  4. XM_052680396.1 → XP_052536356.1  protein CLEC16A isoform X3

  5. XM_052680400.1 → XP_052536360.1  protein CLEC16A isoform X5

  6. XM_052680398.1 → XP_052536358.1  protein CLEC16A isoform X4

  7. XM_052680397.1 → XP_052536357.1  protein CLEC16A isoform X4

  8. XM_052680401.1 → XP_052536361.1  protein CLEC16A isoform X6

  9. XM_052680402.1 → XP_052536362.1  protein CLEC16A isoform X7

  10. XM_052680394.1 → XP_052536354.1  protein CLEC16A isoform X2

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.