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SGMS1 sphingomyelin synthase 1 [ Tympanuchus pallidicinctus (lesser prairie-chicken) ]

Gene ID: 128077924, updated on 25-Mar-2024

Summary

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Gene symbol
SGMS1
Gene description
sphingomyelin synthase 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Tympanuchus pallidicinctus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Tetraoninae; Tympanuchus
Orthologs
human mouse all
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Genomic context

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See SGMS1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
14
Annotation release Status Assembly Chr Location
RS_2023_02 current pur_lepc_1.0 (GCF_026119805.1) Unplaced Scaffold NW_026294679.1 (34038365..34113705, complement)

NW_026294679.1Genomic Context describing neighboring genes Neighboring gene APOBEC1 complementation factor Neighboring gene putative neutral ceramidase C Neighboring gene multiple inositol-polyphosphate phosphatase 1 Neighboring gene 3'-phosphoadenosine 5'-phosphosulfate synthase 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_026294679 Unplaced Scaffold Reference pur_lepc_1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ceramide cholinephosphotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables sphingomyelin synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in ceramide biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in sphingomyelin biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
phosphatidylcholine:ceramide cholinephosphotransferase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_026119805.1-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference pur_lepc_1.0

Genomic

  1. NW_026294679.1 Reference pur_lepc_1.0

    Range
    34038365..34113705 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_052677605.1 → XP_052533565.1  phosphatidylcholine:ceramide cholinephosphotransferase 1

  2. XM_052677603.1 → XP_052533563.1  phosphatidylcholine:ceramide cholinephosphotransferase 1

  3. XM_052677601.1 → XP_052533561.1  phosphatidylcholine:ceramide cholinephosphotransferase 1

  4. XM_052677607.1 → XP_052533567.1  phosphatidylcholine:ceramide cholinephosphotransferase 1

  5. XM_052677606.1 → XP_052533566.1  phosphatidylcholine:ceramide cholinephosphotransferase 1

  6. XM_052677604.1 → XP_052533564.1  phosphatidylcholine:ceramide cholinephosphotransferase 1

  7. XM_052677602.1 → XP_052533562.1  phosphatidylcholine:ceramide cholinephosphotransferase 1

  8. XM_052677600.1 → XP_052533560.1  phosphatidylcholine:ceramide cholinephosphotransferase 1

  9. XM_052677608.1 → XP_052533568.1  phosphatidylcholine:ceramide cholinephosphotransferase 1

Nucleotide Protein
Heading Accession and Version

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