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LOC128018967 host cell factor 1 [ Carassius gibelio (silver crucian carp) ]

Gene ID: 128018967, updated on 28-May-2024

Summary

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Gene symbol
LOC128018967
Gene description
host cell factor 1
See related
EnsemblRapid:ENSCGBG00020063629
Gene type
protein coding
RefSeq status
MODEL
Organism
Carassius gibelio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Cyprininae; Carassius
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Genomic context

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See LOC128018967 in Genome Data Viewer
Location:
chromosome: A8
Exon count:
29
Annotation release Status Assembly Chr Location
RS_2023_02 current carGib1.2-hapl.c (GCF_023724105.1) A8 NC_068378.1 (24373202..24397101)

Chromosome A8 - NC_068378.1Genomic Context describing neighboring genes Neighboring gene methyl-CpG-binding protein 2 Neighboring gene interleukin-1 receptor-associated kinase 1 Neighboring gene cyclin-dependent kinase 20 Neighboring gene GATA binding protein 1b

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_068378.1 Chromosome A8 Reference carGib1.2-hapl.c Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transcription coactivator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chromatin remodeling IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of histone methyltransferase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
host cell factor 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_023724105.1-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference carGib1.2-hapl.c Primary Assembly

Genomic

  1. NC_068378.1 Reference carGib1.2-hapl.c Primary Assembly

    Range
    24373202..24397101
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_052604894.1 → XP_052460854.1  host cell factor 1 isoform X1

    Related
    ENSCGBP00020094219.1, ENSCGBT00020129663.1

  2. XM_052604895.1 → XP_052460855.1  host cell factor 1 isoform X2

    Related
    ENSCGBP00020094222.1, ENSCGBT00020129666.1
Nucleotide Protein
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