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sgcd sarcoglycan, delta (dystrophin-associated glycoprotein) [ Carassius gibelio (silver crucian carp) ]

Gene ID: 127985967, updated on 28-May-2024

Summary

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Gene symbol
sgcd
Gene description
sarcoglycan, delta (dystrophin-associated glycoprotein)
See related
EnsemblRapid:ENSCGBG00020030592
Gene type
protein coding
RefSeq status
MODEL
Organism
Carassius gibelio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Cyprininae; Carassius
Orthologs
human zebrafish all
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Genomic context

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See sgcd in Genome Data Viewer
Location:
chromosome: B21
Exon count:
15
Annotation release Status Assembly Chr Location
RS_2023_02 current carGib1.2-hapl.c (GCF_023724105.1) B21 NC_068416.1 (382329..852054, complement)

Chromosome B21 - NC_068416.1Genomic Context describing neighboring genes Neighboring gene interferon-induced GTP-binding protein Mx Neighboring gene uncharacterized LOC127986020 Neighboring gene zinc finger BED domain-containing protein 4-like Neighboring gene uncharacterized LOC127985963 Neighboring gene uncharacterized LOC127985995 Neighboring gene uncharacterized LOC127986035 Neighboring gene uncharacterized LOC127986013 Neighboring gene uncharacterized LOC127986026

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_068416.1 Chromosome B21 Reference carGib1.2-hapl.c Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cardiac muscle tissue development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in heart contraction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of sarcoglycan complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in sarcolemma IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
delta-sarcoglycan

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_023724105.1-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference carGib1.2-hapl.c Primary Assembly

Genomic

  1. NC_068416.1 Reference carGib1.2-hapl.c Primary Assembly

    Range
    382329..852054 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_052588189.1 → XP_052444149.1  delta-sarcoglycan isoform X3

  2. XM_052588187.1 → XP_052444147.1  delta-sarcoglycan isoform X1

  3. XM_052588188.1 → XP_052444148.1  delta-sarcoglycan isoform X2

  4. XM_052588190.1 → XP_052444150.1  delta-sarcoglycan isoform X3

  5. XM_052588193.1 → XP_052444153.1  delta-sarcoglycan isoform X5

  6. XM_052588192.1 → XP_052444152.1  delta-sarcoglycan isoform X5

  7. XM_052588191.1 → XP_052444151.1  delta-sarcoglycan isoform X4

    Related
    ENSCGBP00020023946.1, ENSCGBT00020046263.1
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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