U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC127979082 plectin [ Carassius gibelio (silver crucian carp) ]

Gene ID: 127979082, updated on 28-May-2024

Summary

Go to the top of the page Help
Gene symbol
LOC127979082
Gene description
plectin
See related
EnsemblRapid:ENSCGBG00020066993
Gene type
protein coding
RefSeq status
MODEL
Organism
Carassius gibelio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Cyprininae; Carassius
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC127979082 in Genome Data Viewer
Location:
chromosome: B19
Exon count:
41
Annotation release Status Assembly Chr Location
RS_2023_02 current carGib1.2-hapl.c (GCF_023724105.1) B19 NC_068414.1 (27029526..27136083, complement)

Chromosome B19 - NC_068414.1Genomic Context describing neighboring genes Neighboring gene epiplakin Neighboring gene uncharacterized LOC127979088 Neighboring gene F-box and leucine-rich repeat protein 6 Neighboring gene uncharacterized LOC127979085 Neighboring gene eukaryotic translation initiation factor 3 subunit E-B Neighboring gene uncharacterized LOC127978836

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_068414.1 Chromosome B19 Reference carGib1.2-hapl.c Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ankyrin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables cadherin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables structural constituent of cytoskeleton IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables structural constituent of muscle IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in hemidesmosome assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in intermediate filament cytoskeleton organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in wound healing IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoskeleton IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in focal adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in hemidesmosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in intermediate filament IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in perinuclear region of cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in sarcolemma IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
plectin

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: GCF_023724105.1-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference carGib1.2-hapl.c Primary Assembly

Genomic

  1. NC_068414.1 Reference carGib1.2-hapl.c Primary Assembly

    Range
    27029526..27136083 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_052584201.1 → XP_052440161.1  plectin isoform X2

    Related
    ENSCGBP00020123010.1, ENSCGBT00020166995.1

  2. XM_052584200.1 → XP_052440160.1  plectin isoform X1

    Related
    ENSCGBP00020123011.1, ENSCGBT00020166996.1

  3. XM_052584211.1 → XP_052440171.1  plectin isoform X10

  4. XM_052584207.1 → XP_052440167.1  plectin isoform X7

    Related
    ENSCGBP00020122998.1, ENSCGBT00020166983.1

  5. XM_052584213.1 → XP_052440173.1  plectin isoform X12

    Related
    ENSCGBP00020122997.1, ENSCGBT00020166982.1

  6. XM_052584214.1 → XP_052440174.1  plectin isoform X13

  7. XM_052584212.1 → XP_052440172.1  plectin isoform X11

    Related
    ENSCGBP00020122996.1, ENSCGBT00020166981.1

  8. XM_052584210.1 → XP_052440170.1  plectin isoform X9

  9. XM_052584206.1 → XP_052440166.1  plectin isoform X6

    Related
    ENSCGBP00020122995.1, ENSCGBT00020166980.1

  10. XM_052584203.1 → XP_052440163.1  plectin isoform X3

    Related
    ENSCGBP00020122994.1, ENSCGBT00020166979.1

  11. XM_052584204.1 → XP_052440164.1  plectin isoform X4

  12. XM_052584209.1 → XP_052440169.1  plectin isoform X8

  13. XM_052584205.1 → XP_052440165.1  plectin isoform X5

    Related
    ENSCGBP00020122993.1, ENSCGBT00020166978.1
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.