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LOC127961170 dysferlin [ Carassius gibelio (silver crucian carp) ]

Gene ID: 127961170, updated on 28-May-2024

Summary

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Gene symbol
LOC127961170
Gene description
dysferlin
See related
EnsemblRapid:ENSCGBG00020080282
Gene type
protein coding
RefSeq status
MODEL
Organism
Carassius gibelio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Cyprininae; Carassius
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Genomic context

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See LOC127961170 in Genome Data Viewer
Location:
chromosome: B7
Exon count:
58
Annotation release Status Assembly Chr Location
RS_2023_02 current carGib1.2-hapl.c (GCF_023724105.1) B7 NC_068402.1 (11517846..11594810, complement)

Chromosome B7 - NC_068402.1Genomic Context describing neighboring genes Neighboring gene cytochrome P450 26B1-like Neighboring gene uncharacterized LOC127961169 Neighboring gene uncharacterized LOC127961168 Neighboring gene uncharacterized LOC127961850 Neighboring gene trithorax group protein osa

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_068402.1 Chromosome B7 Reference carGib1.2-hapl.c Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables calcium-dependent phospholipid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in T-tubule organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in macrophage activation involved in immune response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in monocyte activation involved in immune response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of phagocytosis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in plasma membrane repair IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in vesicle fusion IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in T-tubule IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoplasmic vesicle IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
dysferlin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_023724105.1-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference carGib1.2-hapl.c Primary Assembly

Genomic

  1. NC_068402.1 Reference carGib1.2-hapl.c Primary Assembly

    Range
    11517846..11594810 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_052560153.1 → XP_052416113.1  dysferlin isoform X4

  2. XM_052560160.1 → XP_052416120.1  dysferlin isoform X11

    Related
    ENSCGBP00020126134.1, ENSCGBT00020171400.1

  3. XM_052560158.1 → XP_052416118.1  dysferlin isoform X9

    Related
    ENSCGBP00020126148.1, ENSCGBT00020171414.1

  4. XM_052560161.1 → XP_052416121.1  dysferlin isoform X12

    Related
    ENSCGBP00020126135.1, ENSCGBT00020171401.1

  5. XM_052560152.1 → XP_052416112.1  dysferlin isoform X3

  6. XM_052560151.1 → XP_052416111.1  dysferlin isoform X2

  7. XM_052560150.1 → XP_052416110.1  dysferlin isoform X1

  8. XM_052560159.1 → XP_052416119.1  dysferlin isoform X10

  9. XM_052560154.1 → XP_052416114.1  dysferlin isoform X5

  10. XM_052560155.1 → XP_052416115.1  dysferlin isoform X6

    Related
    ENSCGBP00020126133.1, ENSCGBT00020171399.1

  11. XM_052560157.1 → XP_052416117.1  dysferlin isoform X8

  12. XM_052560156.1 → XP_052416116.1  dysferlin isoform X7

Nucleotide Protein
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