U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC127959409 beta-1,4-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase-like [ Carassius gibelio (silver crucian carp) ]

Gene ID: 127959409, updated on 28-May-2024

Summary

Go to the top of the page Help
Gene symbol
LOC127959409
Gene description
beta-1,4-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase-like
See related
EnsemblRapid:ENSCGBG00020055842
Gene type
protein coding
RefSeq status
MODEL
Organism
Carassius gibelio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Cyprininae; Carassius
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC127959409 in Genome Data Viewer
Location:
chromosome: B6
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2023_02 current carGib1.2-hapl.c (GCF_023724105.1) B6 NC_068401.1 (29511536..29531123)

Chromosome B6 - NC_068401.1Genomic Context describing neighboring genes Neighboring gene TGF-beta-activated kinase 1 and MAP3K7-binding protein 1-like Neighboring gene intraflagellar transport 27 homolog (Chlamydomonas) Neighboring gene C1q and TNF related 6b Neighboring gene uncharacterized LOC127959433 Neighboring gene uncharacterized LOC127959431

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_068401.1 Chromosome B6 Reference carGib1.2-hapl.c Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in N-acetylglucosamine metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein N-linked glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
beta-1,4-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase-like

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: GCF_023724105.1-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference carGib1.2-hapl.c Primary Assembly

Genomic

  1. NC_068401.1 Reference carGib1.2-hapl.c Primary Assembly

    Range
    29511536..29531123
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_052558587.1 → XP_052414547.1  beta-1,4-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase-like isoform X3

  2. XM_052558586.1 → XP_052414546.1  beta-1,4-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase-like isoform X3

  3. XM_052558585.1 → XP_052414545.1  beta-1,4-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase-like isoform X3

    Related
    ENSCGBP00020076775.1, ENSCGBT00020109084.1

  4. XM_052558584.1 → XP_052414544.1  beta-1,4-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase-like isoform X2

    Related
    ENSCGBP00020076774.1, ENSCGBT00020109083.1

  5. XM_052558583.1 → XP_052414543.1  beta-1,4-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase-like isoform X1

    Related
    ENSCGBP00020076772.1, ENSCGBT00020109081.1
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases