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pigm phosphatidylinositol glycan anchor biosynthesis, class M [ Carassius gibelio (silver crucian carp) ]

Gene ID: 127946311, updated on 28-May-2024

Summary

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Gene symbol
pigm
Gene description
phosphatidylinositol glycan anchor biosynthesis, class M
See related
EnsemblRapid:ENSCGBG00020028872
Gene type
protein coding
RefSeq status
MODEL
Organism
Carassius gibelio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Cyprininae; Carassius
Orthologs
human zebrafish all
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Genomic context

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See pigm in Genome Data Viewer
Location:
chromosome: A24
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2023_02 current carGib1.2-hapl.c (GCF_023724105.1) A24 NC_068394.1 (244366..249180)

Chromosome A24 - NC_068394.1Genomic Context describing neighboring genes Neighboring gene NEDD4-like E3 ubiquitin-protein ligase WWP1 Neighboring gene sorting nexin 16 Neighboring gene aryl hydrocarbon receptor repressor-like Neighboring gene ankyrin repeat and SAM domain-containing protein 6 Neighboring gene receptor activity-modifying protein 3-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_068394.1 Chromosome A24 Reference carGib1.2-hapl.c Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables alpha-1,4-mannosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables glycolipid mannosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in GPI anchor biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of glycosylphosphatidylinositol-mannosyltransferase I complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
GPI mannosyltransferase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_023724105.1-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference carGib1.2-hapl.c Primary Assembly

Genomic

  1. NC_068394.1 Reference carGib1.2-hapl.c Primary Assembly

    Range
    244366..249180
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_052542791.1 → XP_052398751.1  GPI mannosyltransferase 1

    Related
    ENSCGBP00020019913.1, ENSCGBT00020041739.1
Nucleotide Protein
Heading Accession and Version

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