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LOC127935553 plectin-like [ Carassius gibelio (silver crucian carp) ]

Gene ID: 127935553, updated on 28-May-2024

Summary

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Gene symbol
LOC127935553
Gene description
plectin-like
See related
EnsemblRapid:ENSCGBG00020063094
Gene type
protein coding
RefSeq status
MODEL
Organism
Carassius gibelio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Cyprininae; Carassius
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Genomic context

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See LOC127935553 in Genome Data Viewer
Location:
chromosome: A19
Exon count:
42
Annotation release Status Assembly Chr Location
RS_2023_02 current carGib1.2-hapl.c (GCF_023724105.1) A19 NC_068389.1 (20895289..20983310, complement)

Chromosome A19 - NC_068389.1Genomic Context describing neighboring genes Neighboring gene solute carrier family 52, riboflavin transporter, member 2 Neighboring gene epiplakin-like Neighboring gene eukaryotic translation initiation factor 3, subunit E, b Neighboring gene transmembrane protein 74-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_068389.1 Chromosome A19 Reference carGib1.2-hapl.c Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ankyrin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables cadherin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables structural constituent of cytoskeleton IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables structural constituent of muscle IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in hemidesmosome assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in intermediate filament cytoskeleton organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in wound healing IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoskeleton IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in focal adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in hemidesmosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in intermediate filament IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in perinuclear region of cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in sarcolemma IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
plectin-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_023724105.1-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference carGib1.2-hapl.c Primary Assembly

Genomic

  1. NC_068389.1 Reference carGib1.2-hapl.c Primary Assembly

    Range
    20895289..20983310 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_052533524.1 → XP_052389484.1  plectin-like isoform X2

  2. XM_052533523.1 → XP_052389483.1  plectin-like isoform X1

    Related
    ENSCGBP00020114588.1, ENSCGBT00020155932.1

  3. XM_052533525.1 → XP_052389485.1  plectin-like isoform X3

    Related
    ENSCGBP00020114585.1, ENSCGBT00020155929.1

  4. XM_052533534.1 → XP_052389494.1  plectin-like isoform X11

  5. XM_052533531.1 → XP_052389491.1  plectin-like isoform X8

    Related
    ENSCGBP00020114354.1, ENSCGBT00020155597.1

  6. XM_052533535.1 → XP_052389495.1  plectin-like isoform X12

    Related
    ENSCGBP00020114353.1, ENSCGBT00020155596.1

  7. XM_052533536.1 → XP_052389496.1  plectin-like isoform X13

    Related
    ENSCGBP00020114352.1, ENSCGBT00020155595.1

  8. XM_052533533.1 → XP_052389493.1  plectin-like isoform X10

  9. XM_052533530.1 → XP_052389490.1  plectin-like isoform X7

    Related
    ENSCGBP00020114351.1, ENSCGBT00020155594.1

  10. XM_052533527.1 → XP_052389487.1  plectin-like isoform X5

  11. XM_052533526.1 → XP_052389486.1  plectin-like isoform X4

    Related
    ENSCGBP00020114343.1, ENSCGBT00020155586.1

  12. XM_052533528.1 → XP_052389488.1  plectin-like isoform X6

    Related
    ENSCGBP00020114341.1, ENSCGBT00020155584.1

  13. XM_052533532.1 → XP_052389492.1  plectin-like isoform X9

Nucleotide Protein
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