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LOC127915142 plectin-like [ Oncorhynchus keta (chum salmon) ]

Gene ID: 127915142, updated on 23-Nov-2023

Summary

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Gene symbol
LOC127915142
Gene description
plectin-like
See related
EnsemblRapid:ENSOKEG00005015345
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus keta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
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Genomic context

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See LOC127915142 in Genome Data Viewer
Location:
chromosome: 34
Exon count:
43
Annotation release Status Assembly Chr Location
RS_2023_03 current Oket_V2 (GCF_023373465.1) 34 NC_068454.1 (54214808..54392128)

Chromosome 34 - NC_068454.1Genomic Context describing neighboring genes Neighboring gene eukaryotic translation initiation factor 3 subunit E Neighboring gene R-spondin 2 Neighboring gene uncharacterized LOC118367293 Neighboring gene nuclear factor 7, brain-like Neighboring gene microtubule actin crosslinking factor 1b Neighboring gene riboflavin transporter 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_068454.1 Chromosome 34 Reference Oket_V2 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ankyrin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables cadherin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables structural constituent of cytoskeleton IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables structural constituent of muscle IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in hemidesmosome assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in intermediate filament cytoskeleton organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in wound healing IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoskeleton IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in focal adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in hemidesmosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in intermediate filament IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in perinuclear region of cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in sarcolemma IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
plectin-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_023373465.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Oket_V2 Primary Assembly

Genomic

  1. NC_068454.1 Reference Oket_V2 Primary Assembly

    Range
    54214808..54392128
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_052494082.1 → XP_052350042.1  plectin-like isoform X5

  2. XM_052494083.1 → XP_052350043.1  plectin-like isoform X6

  3. XM_052494084.1 → XP_052350044.1  plectin-like isoform X7

    Related
    ENSOKEP00005026484.1, ENSOKET00005030571.1

  4. XM_052494095.1 → XP_052350055.1  plectin-like isoform X18

    Related
    ENSOKEP00005026426.1, ENSOKET00005030513.1

  5. XM_052494087.1 → XP_052350047.1  plectin-like isoform X10

    Related
    ENSOKEP00005026472.1, ENSOKET00005030559.1

  6. XM_052494091.1 → XP_052350051.1  plectin-like isoform X14

  7. XM_052494092.1 → XP_052350052.1  plectin-like isoform X15

    Related
    ENSOKEP00005026401.1, ENSOKET00005030484.1

  8. XM_052494090.1 → XP_052350050.1  plectin-like isoform X13

  9. XM_052494078.1 → XP_052350038.1  plectin-like isoform X1

  10. XM_052494079.1 → XP_052350039.1  plectin-like isoform X2

  11. XM_052494080.1 → XP_052350040.1  plectin-like isoform X3

    Related
    ENSOKEP00005026299.1, ENSOKET00005030384.1

  12. XM_052494081.1 → XP_052350041.1  plectin-like isoform X4

    Related
    ENSOKEP00005026350.1, ENSOKET00005030436.1

  13. XM_052494094.1 → XP_052350054.1  plectin-like isoform X17

  14. XM_052494093.1 → XP_052350053.1  plectin-like isoform X16

    Related
    ENSOKEP00005026286.1, ENSOKET00005030371.1

  15. XM_052494088.1 → XP_052350048.1  plectin-like isoform X11

  16. XM_052494085.1 → XP_052350045.1  plectin-like isoform X8

  17. XM_052494086.1 → XP_052350046.1  plectin-like isoform X9

    Related
    ENSOKEP00005026263.1, ENSOKET00005030350.1

  18. XM_052494089.1 → XP_052350049.1  plectin-like isoform X12

Nucleotide Protein Strain
Heading Accession and Version

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