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LOC127892552 H3K4me1 hESC enhancer GRCh37_chr20:5606161-5606662 [ Homo sapiens (human) ]

Gene ID: 127892552, updated on 12-Sep-2024

Summary

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Gene symbol
LOC127892552
Gene description
H3K4me1 hESC enhancer GRCh37_chr20:5606161-5606662
Gene type
biological region
Feature type(s)
regulatory: enhancer
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
This genomic region was validated as an active enhancer by the ChIP-STARR-seq massively parallel reporter assay in primed human embryonic stem cells. This enhancer is marked by the H3K4me1 histone modification. [provided by RefSeq, Dec 2022]
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Genomic context

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See LOC127892552 in Genome Data Viewer
Location:
chromosome: 20
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 20 NC_000020.11 (5625515..5626016)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 20 NC_060944.1 (5665845..5666346)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 20 NC_000020.10 (5606161..5606662)

Chromosome 20 - NC_000020.11Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17520 Neighboring gene ribosomal protein S18 pseudogene 1 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr20:5533770-5534499 Neighboring gene glycerophosphocholine phosphodiesterase 1 Neighboring gene eukaryotic translation initiation factor 4E pseudogene 1 Neighboring gene Sharpr-MPRA regulatory region 4324 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 12656 Neighboring gene H3K27ac hESC enhancer GRCh37_chr20:5590486-5591358 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 12657 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17521 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17522 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17523 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17524 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17525 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17526 Neighboring gene uncharacterized LOC124904864 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:5637190-5637690 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:5637691-5638191 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:5668750-5669250 Neighboring gene Sharpr-MPRA regulatory region 5332 Neighboring gene uncharacterized LOC105372514

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Functional Dissection of the Enhancer Repertoire in Human Embryonic Stem Cells. Barakat TS, et al. Cell Stem Cell, 2018 Aug 2. PMID 30033119, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See Variation Viewer (GRCh37.p13)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_142355.1 

    Range
    101..602
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    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000020.11 Reference GRCh38.p14 Primary Assembly

    Range
    5625515..5626016
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    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060944.1 Alternate T2T-CHM13v2.0

    Range
    5665845..5666346
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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