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LOC127891114 H3K4me1 hESC enhancer GRCh37_chr19:29910274-29911005 [ Homo sapiens (human) ]

Gene ID: 127891114, updated on 10-Oct-2023

Summary

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Gene symbol
LOC127891114
Gene description
H3K4me1 hESC enhancer GRCh37_chr19:29910274-29911005
Gene type
biological region
Feature type(s)
regulatory: enhancer
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
This genomic region was validated as an active enhancer by the ChIP-STARR-seq massively parallel reporter assay in primed human embryonic stem cells. This enhancer is marked by the H3K4me1 histone modification. [provided by RefSeq, Dec 2022]
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Genomic context

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See LOC127891114 in Genome Data Viewer
Location:
chromosome: 19
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 19 NC_000019.10 (29419367..29420098)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 19 NC_060943.1 (31950470..31951201)

Chromosome 19 - NC_000019.10Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid active region 14405 Neighboring gene UQCRFS1 divergent transcript Neighboring gene RNA, 7SL, cytoplasmic 340, pseudogene Neighboring gene ReSE screen-validated silencer GRCh37_chr19:29763000-29763195 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 14406 Neighboring gene VSTM2B divergent transcript Neighboring gene H3K4me1 hESC enhancer GRCh37_chr19:29799690-29800520 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr19:29802083-29802584 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr19:29802585-29803084 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_50764 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr19:29814030-29814530 Neighboring gene MPRA-validated peak3428 silencer Neighboring gene H3K4me1 hESC enhancer GRCh37_chr19:29862474-29863068 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr19:29863069-29863661 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_50790 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_50793 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr19:29895755-29896381 Neighboring gene Sharpr-MPRA regulatory region 9443 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr19:29908074-29908807 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_50884 Neighboring gene uncharacterized LOC124904683 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr19:30025281-30025781 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr19:30030190-30030690 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr19:30030691-30031191 Neighboring gene V-set and transmembrane domain containing 2B Neighboring gene H3K4me1 hESC enhancer GRCh37_chr19:30053547-30054047 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr19:30055952-30056800 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr19:30059413-30059913 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr19:30086866-30087366 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr19:30087367-30087867 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 14407 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr19:30100801-30101312 Neighboring gene POP4 homolog, ribonuclease P/MRP subunit

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Functional Dissection of the Enhancer Repertoire in Human Embryonic Stem Cells. Barakat TS, et al. Cell Stem Cell, 2018 Aug 2. PMID 30033119, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_141002.1 

    Range
    101..832
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000019.10 Reference GRCh38.p14 Primary Assembly

    Range
    29419367..29420098
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    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060943.1 Alternate T2T-CHM13v2.0

    Range
    31950470..31951201
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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