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LOC127888763 H3K4me1 hESC enhancer GRCh37_chr18:9022070-9022745 [ Homo sapiens (human) ]

Gene ID: 127888763, updated on 12-Sep-2024

Summary

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Gene symbol
LOC127888763
Gene description
H3K4me1 hESC enhancer GRCh37_chr18:9022070-9022745
Gene type
biological region
Feature type(s)
regulatory: enhancer
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
This genomic region was validated as an active enhancer by the ChIP-STARR-seq massively parallel reporter assay in naive human embryonic stem cells. This enhancer is marked by the H3K4me1 histone modification. [provided by RefSeq, Dec 2022]
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Genomic context

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See LOC127888763 in Genome Data Viewer
Location:
chromosome: 18
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 18 NC_000018.10 (9022072..9022747)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 18 NC_060942.1 (9185496..9186171)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 18 NC_000018.9 (9022070..9022745)

Chromosome 18 - NC_000018.10Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 9274 Neighboring gene NANOG hESC enhancer GRCh37_chr18:8708630-8709131 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr18:8724358-8724941 Neighboring gene Sharpr-MPRA regulatory region 10096 Neighboring gene gastric cancer associated transcript 2 Neighboring gene microtubule crosslinking factor 1 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr18:8766085-8766684 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr18:8766685-8767282 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr18:8771566-8772066 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr18:8772067-8772567 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr18:8790509-8791032 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr18:8800176-8801375 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr18:8818635-8819136 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr18:8829938-8830461 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr18:8830462-8830984 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr18:8844937-8845437 Neighboring gene MPRA-validated peak3053 silencer Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr18:8948615-8949387 Neighboring gene NANOG hESC enhancer GRCh37_chr18:8977106-8977637 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 13063 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr18:8990234-8990766 Neighboring gene NANOG hESC enhancer GRCh37_chr18:8997551-8998052 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr18:9017064-9018263 Neighboring gene ReSE screen-validated silencer GRCh37_chr18:9037094-9037241 Neighboring gene ribosomal protein S4X pseudogene 19 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 9276 Neighboring gene uncharacterized LOC124904243 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 13066 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 13067 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 13068 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 13069 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 9277 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr18:9103057-9103766 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 13070 Neighboring gene NDUFV2 antisense RNA 1 Neighboring gene NADH:ubiquinone oxidoreductase core subunit V2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See Variation Viewer (GRCh37.p13)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_138341.1 

    Range
    101..776
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000018.10 Reference GRCh38.p14 Primary Assembly

    Range
    9022072..9022747
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060942.1 Alternate T2T-CHM13v2.0

    Range
    9185496..9186171
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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