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LOC127884915 H3K4me1 hESC enhancer GRCh37_chr16:85917116-85917616 [ Homo sapiens (human) ]

Gene ID: 127884915, updated on 10-Oct-2023

Summary

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Gene symbol
LOC127884915
Gene description
H3K4me1 hESC enhancer GRCh37_chr16:85917116-85917616
Gene type
biological region
Feature type(s)
regulatory: enhancer
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
This genomic region was validated as an active enhancer by the ChIP-STARR-seq massively parallel reporter assay in primed human embryonic stem cells. This enhancer is marked by the H3K4me1 histone modification. [provided by RefSeq, Dec 2022]
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Genomic context

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Location:
chromosome: 16
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 16 NC_000016.10 (85883510..85884010)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 16 NC_060940.1 (91950009..91950509)

Chromosome 16 - NC_000016.10Genomic Context describing neighboring genes Neighboring gene iron-sulfur cluster assembly 1 homolog (S. cerevisiae) pseudogene Neighboring gene ribosomal protein L10a pseudogene 12 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:85855434-85855943 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 11289 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 11290 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 11291 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:85894503-85895002 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 7826 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 7827 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 11292 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 11293 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 11294 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 11295 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 11296 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 11297 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 7828 Neighboring gene interferon regulatory factor 8 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 11298 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:85948479-85949144 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 7829 Neighboring gene microRNA 6774 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 11299 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 11300 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:85969463-85969962 Neighboring gene long intergenic non-protein coding RNA 2132

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Functional Dissection of the Enhancer Repertoire in Human Embryonic Stem Cells. Barakat TS, et al. Cell Stem Cell, 2018 Aug 2. PMID 30033119, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_134673.1 

    Range
    101..601
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000016.10 Reference GRCh38.p14 Primary Assembly

    Range
    85883510..85884010
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060940.1 Alternate T2T-CHM13v2.0

    Range
    91950009..91950509
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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