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LOC127816204 H3K4me1 hESC enhancer GRCh37_chr9:132040219-132041127 [ Homo sapiens (human) ]

Gene ID: 127816204, updated on 10-Oct-2023

Summary

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Gene symbol
LOC127816204
Gene description
H3K4me1 hESC enhancer GRCh37_chr9:132040219-132041127
Gene type
biological region
Feature type(s)
regulatory: enhancer
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
This genomic region was validated as an active enhancer by the ChIP-STARR-seq massively parallel reporter assay in naive human embryonic stem cells. This enhancer is marked by the H3K4me1 histone modification. [provided by RefSeq, Nov 2022]
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Genomic context

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See LOC127816204 in Genome Data Viewer
Location:
chromosome: 9
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 9 NC_000009.12 (129277940..129278848)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 9 NC_060933.1 (141480110..141481018)

Chromosome 9 - NC_000009.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105376289 Neighboring gene Sharpr-MPRA regulatory region 2152 Neighboring gene Sharpr-MPRA regulatory region 6917 Neighboring gene IER5L antisense RNA 1 Neighboring gene Sharpr-MPRA regulatory region 6206 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:132010097-132010597 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:132015078-132015933 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 20370 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:132020886-132021424 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:132039310-132040218 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:132046985-132047958 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:132047959-132048932 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:132049874-132050856 Neighboring gene long intergenic non-protein coding RNA 2975 Neighboring gene uncharacterized LOC107987133

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Functional Dissection of the Enhancer Repertoire in Human Embryonic Stem Cells. Barakat TS, et al. Cell Stem Cell, 2018 Aug 2. PMID 30033119, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_117708.1 

    Range
    101..1009
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000009.12 Reference GRCh38.p14 Primary Assembly

    Range
    129277940..129278848
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060933.1 Alternate T2T-CHM13v2.0

    Range
    141480110..141481018
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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