U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC127815983 H3K4me1 hESC enhancer GRCh37_chr9:129281950-129282456 [ Homo sapiens (human) ]

Gene ID: 127815983, updated on 12-Sep-2024

Summary

Go to the top of the page Help
Gene symbol
LOC127815983
Gene description
H3K4me1 hESC enhancer GRCh37_chr9:129281950-129282456
Gene type
biological region
Feature type(s)
regulatory: enhancer
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
This genomic region was validated as an active enhancer by the ChIP-STARR-seq massively parallel reporter assay in primed human embryonic stem cells. This enhancer is marked by the H3K4me1 histone modification. [provided by RefSeq, Nov 2022]
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: 9
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 9 NC_000009.12 (126519671..126520177)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 9 NC_060933.1 (138725112..138725618)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 9 NC_000009.11 (129281950..129282456)

Chromosome 9 - NC_000009.12Genomic Context describing neighboring genes Neighboring gene multivesicular body subunit 12B Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:129177967-129178559 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:129183037-129183720 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:129183721-129184405 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:129185921-129186420 Neighboring gene uncharacterized LOC124902337 Neighboring gene VISTA enhancer hs186 Neighboring gene non-coding repressor of NFAT Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:129214117-129214618 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr9:129236685-129237884 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:129238046-129238625 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:129238626-129239204 Neighboring gene Sharpr-MPRA regulatory region 3753 Neighboring gene Sharpr-MPRA regulatory region 6068 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:129270146-129270646 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 20288 Neighboring gene uncharacterized LOC105376276 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 29016 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:129283760-129284260 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:129284261-129284761 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:129293424-129294057 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:129296024-129296550 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:129296551-129297075 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:129297602-129298126 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:129298952-129299452 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:129299453-129299953 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:129319165-129319741 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:129345084-129345584 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_106628 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:129350068-129350902 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:129350903-129351737 Neighboring gene uncharacterized LOC124902272 Neighboring gene ReSE screen-validated silencer GRCh37_chr9:129370112-129370312 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:129372327-129373191 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 20289 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:129375135-129376103 Neighboring gene LMX1B divergent transcript

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Functional Dissection of the Enhancer Repertoire in Human Embryonic Stem Cells. Barakat TS, et al. Cell Stem Cell, 2018 Aug 2. PMID 30033119, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

Go to the top of the page Help

Review eQTL and phenotype association data in this region using PheGenI

Variation

Go to the top of the page Help

See Variation Viewer (GRCh37.p13)

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_117488.1 

    Range
    101..607
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000009.12 Reference GRCh38.p14 Primary Assembly

    Range
    126519671..126520177
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060933.1 Alternate T2T-CHM13v2.0

    Range
    138725112..138725618
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases