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LOC127814716 H3K4me1 hESC enhancer GRCh37_chr9:36867937-36868628 [ Homo sapiens (human) ]

Gene ID: 127814716, updated on 10-Oct-2023

Summary

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Gene symbol
LOC127814716
Gene description
H3K4me1 hESC enhancer GRCh37_chr9:36867937-36868628
Gene type
biological region
Feature type(s)
regulatory: enhancer
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
This genomic region was validated as an active enhancer by the ChIP-STARR-seq massively parallel reporter assay in primed human embryonic stem cells. This enhancer is marked by the H3K4me1 histone modification. [provided by RefSeq, Nov 2022]
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Genomic context

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See LOC127814716 in Genome Data Viewer
Location:
chromosome: 9
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 9 NC_000009.12 (36867940..36868631)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 9 NC_060933.1 (36891523..36892214)

Chromosome 9 - NC_000009.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105376030 Neighboring gene microRNA 4475 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:36848015-36848854 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr9:36851359-36852558 Neighboring gene paired box 5 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28357 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28358 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:36879416-36880112 Neighboring gene microRNA 4540 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:36900581-36901081 Neighboring gene microRNA 4476 Neighboring gene MTA1-activated intronic PAX5 enhancer Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28359 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28360 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28362 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28361 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:36947656-36948180 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:36961379-36962370 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:36962371-36963361 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:36980425-36980924 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:36986501-36987456 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28363 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28364 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28365 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28366 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:36996149-36996649 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:36997151-36997666 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:36997667-36998181 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28368 Neighboring gene uncharacterized LOC105376032 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28369

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Functional Dissection of the Enhancer Repertoire in Human Embryonic Stem Cells. Barakat TS, et al. Cell Stem Cell, 2018 Aug 2. PMID 30033119, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_116236.1 

    Range
    101..792
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000009.12 Reference GRCh38.p14 Primary Assembly

    Range
    36867940..36868631
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    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060933.1 Alternate T2T-CHM13v2.0

    Range
    36891523..36892214
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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