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LOC127760447 carboxyl-terminal-processing peptidase 1, chloroplastic [ Oryza glaberrima (African rice) ]

Gene ID: 127760447, updated on 23-Nov-2023

Summary

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Gene symbol
LOC127760447
Gene description
carboxyl-terminal-processing peptidase 1, chloroplastic
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza glaberrima
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Genomic context

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See LOC127760447 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
13
Annotation release Status Assembly Chr Location
100 current OglaRS2 (GCF_000147395.1) 1 NC_068326.1 (24681361..24687103)

Chromosome 1 - NC_068326.1Genomic Context describing neighboring genes Neighboring gene pterin-4-alpha-carbinolamine dehydratase 2, mitochondrial Neighboring gene uncharacterized LOC127771828 Neighboring gene uncharacterized LOC127760066 Neighboring gene probable receptor-like protein kinase At2g42960

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_068326.1 Chromosome 1 Reference OglaRS2 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables endopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables serine-type peptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in proteolysis IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
carboxyl-terminal-processing peptidase 1, chloroplastic

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oryza glaberrima Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference OglaRS2 Primary Assembly

Genomic

  1. NC_068326.1 Reference OglaRS2 Primary Assembly

    Range
    24681361..24687103
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_052284711.1 → XP_052140671.1  carboxyl-terminal-processing peptidase 1, chloroplastic

Nucleotide Protein
Heading Accession and Version

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