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LOC127754385 glutamine--tRNA ligase-like [ Oryza glaberrima (African rice) ]

Gene ID: 127754385, updated on 23-Nov-2023

Summary

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Gene symbol
LOC127754385
Gene description
glutamine--tRNA ligase-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza glaberrima
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Genomic context

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See LOC127754385 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
22
Annotation release Status Assembly Chr Location
100 current OglaRS2 (GCF_000147395.1) 1 NC_068326.1 (4006663..4012921, complement)

Chromosome 1 - NC_068326.1Genomic Context describing neighboring genes Neighboring gene FACT complex subunit SSRP1-A Neighboring gene uncharacterized LOC127760219 Neighboring gene acyl transferase 9 Neighboring gene L10-interacting MYB domain-containing protein-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_068326.1 Chromosome 1 Reference OglaRS2 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables glutamine-tRNA ligase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in glutaminyl-tRNA aminoacylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in translation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
glutamine--tRNA ligase-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oryza glaberrima Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference OglaRS2 Primary Assembly

Genomic

  1. NC_068326.1 Reference OglaRS2 Primary Assembly

    Range
    4006663..4012921 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_052279893.1 → XP_052135853.1  glutamine--tRNA ligase-like

    UniProtKB/TrEMBL
    I1NKX7
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases