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LOC127706209 glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1-like [ Mytilus californianus (California mussel) ]

Gene ID: 127706209, updated on 10-Apr-2024

Summary

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Gene symbol
LOC127706209
Gene description
glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1-like
See related
EnsemblRapid:LOC127706209
Gene type
protein coding
RefSeq status
MODEL
Organism
Mytilus californianus
Lineage
Eukaryota; Metazoa; Spiralia; Lophotrochozoa; Mollusca; Bivalvia; Autobranchia; Pteriomorphia; Mytilida; Mytiloidea; Mytilidae; Mytilinae; Mytilus
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Genomic context

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See LOC127706209 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
3
Annotation release Status Assembly Chr Location
100 current xbMytCali1.0.p (GCF_021869535.1) Unplaced Scaffold NW_026262712.1 (47872290..47877112)

NW_026262712.1Genomic Context describing neighboring genes Neighboring gene delta and Notch-like epidermal growth factor-related receptor Neighboring gene uncharacterized LOC127706214 Neighboring gene uncharacterized LOC127706213 Neighboring gene glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_026262712 Unplaced Scaffold Reference xbMytCali1.0.p

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A cohort of new adhesive proteins identified from transcriptomic analysis of mussel foot glands. DeMartini DG, et al. J R Soc Interface, 2017 Jun. PMID 28592662, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in O-glycan processing, core 1 IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Mytilus californianus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference xbMytCali1.0.p

Genomic

  1. NW_026262712.1 Reference xbMytCali1.0.p

    Range
    47872290..47877112
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_052210692.1 → XP_052066652.1  glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1-like

    Related
    XP_052066652.1, XM_052210692.1
Nucleotide Protein
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