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HMGCL 3-hydroxy-3-methylglutaryl-CoA lyase [ Antechinus flavipes (yellow-footed antechinus) ]

Gene ID: 127555710, updated on 11-Apr-2024

Summary

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Gene symbol
HMGCL
Gene description
3-hydroxy-3-methylglutaryl-CoA lyase
Gene type
protein coding
RefSeq status
MODEL
Organism
Antechinus flavipes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Metatheria; Dasyuromorphia; Dasyuridae; Antechinus
Orthologs
human mouse all
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Genomic context

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See HMGCL in Genome Data Viewer
Location:
chromosome: 3
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2023_02 current AdamAnt_v2 (GCF_016432865.1) 3 NC_067400.1 (580835706..580849124)

Chromosome 3 - NC_067400.1Genomic Context describing neighboring genes Neighboring gene alpha-L-fucosidase 1 Neighboring gene rho-related GTP-binding protein RhoV-like Neighboring gene UDP-galactose-4-epimerase Neighboring gene lysophospholipase 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_067400.1 Chromosome 3 Reference AdamAnt_v2 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables hydroxymethylglutaryl-CoA lyase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in L-leucine catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in ketone body biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
hydroxymethylglutaryl-CoA lyase, mitochondrial

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_016432865.1-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference AdamAnt_v2 Primary Assembly

Genomic

  1. NC_067400.1 Reference AdamAnt_v2 Primary Assembly

    Range
    580835706..580849124
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_051988242.1 → XP_051844202.1  hydroxymethylglutaryl-CoA lyase, mitochondrial isoform X1

  2. XM_051988244.1 → XP_051844204.1  hydroxymethylglutaryl-CoA lyase, mitochondrial isoform X3

  3. XM_051988243.1 → XP_051844203.1  hydroxymethylglutaryl-CoA lyase, mitochondrial isoform X2

  4. XM_051988245.1 → XP_051844205.1  hydroxymethylglutaryl-CoA lyase, mitochondrial isoform X3

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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