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DEGS2 delta 4-desaturase, sphingolipid 2 [ Antechinus flavipes (yellow-footed antechinus) ]

Gene ID: 127549910, updated on 24-Mar-2024

Summary

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Gene symbol
DEGS2
Gene description
delta 4-desaturase, sphingolipid 2
Gene type
protein coding
RefSeq status
MODEL
Organism
Antechinus flavipes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Metatheria; Dasyuromorphia; Dasyuridae; Antechinus
Orthologs
human mouse all
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Genomic context

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See DEGS2 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2023_02 current AdamAnt_v2 (GCF_016432865.1) 2 NC_067399.1 (376925005..377066980)

Chromosome 2 - NC_067399.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC127546443 Neighboring gene solute carrier family 25 member 29 Neighboring gene uncharacterized LOC127549913 Neighboring gene YY1 transcription factor Neighboring gene uncharacterized LOC127549912 Neighboring gene Enah/Vasp-like Neighboring gene U6 spliceosomal RNA Neighboring gene EMAP like 1 Neighboring gene uncharacterized LOC127549917

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_067399.1 Chromosome 2 Reference AdamAnt_v2 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables sphingolipid delta-4 desaturase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables sphingosine hydroxylase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in ceramide biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in sphinganine metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
sphingolipid delta(4)-desaturase/C4-monooxygenase DES2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_016432865.1-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference AdamAnt_v2 Primary Assembly

Genomic

  1. NC_067399.1 Reference AdamAnt_v2 Primary Assembly

    Range
    376925005..377066980
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_051978383.1 → XP_051834343.1  sphingolipid delta(4)-desaturase/C4-monooxygenase DES2 isoform X3

  2. XM_051978380.1 → XP_051834340.1  sphingolipid delta(4)-desaturase/C4-monooxygenase DES2 isoform X3

  3. XM_051978381.1 → XP_051834341.1  sphingolipid delta(4)-desaturase/C4-monooxygenase DES2 isoform X3

  4. XM_051978378.1 → XP_051834338.1  sphingolipid delta(4)-desaturase/C4-monooxygenase DES2 isoform X1

  5. XM_051978382.1 → XP_051834342.1  sphingolipid delta(4)-desaturase/C4-monooxygenase DES2 isoform X3

  6. XM_051978379.1 → XP_051834339.1  sphingolipid delta(4)-desaturase/C4-monooxygenase DES2 isoform X2

Nucleotide Protein
Heading Accession and Version

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