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THBS1 thrombospondin 1 [ Antechinus flavipes (yellow-footed antechinus) ]

Gene ID: 127549212, updated on 24-Mar-2024

Summary

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Gene symbol
THBS1
Gene description
thrombospondin 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Antechinus flavipes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Metatheria; Dasyuromorphia; Dasyuridae; Antechinus
Orthologs
human mouse all
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Genomic context

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See THBS1 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
22
Annotation release Status Assembly Chr Location
RS_2023_02 current AdamAnt_v2 (GCF_016432865.1) 2 NC_067399.1 (271738937..271757870)

Chromosome 2 - NC_067399.1Genomic Context describing neighboring genes Neighboring gene junctional adhesion molecule A-like Neighboring gene uncharacterized LOC127546265 Neighboring gene fibrous sheath interacting protein 1 Neighboring gene G protein-coupled receptor 176

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_067399.1 Chromosome 2 Reference AdamAnt_v2 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of angiogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
thrombospondin-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_016432865.1-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference AdamAnt_v2 Primary Assembly

Genomic

  1. NC_067399.1 Reference AdamAnt_v2 Primary Assembly

    Range
    271738937..271757870
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_051977054.1 → XP_051833014.1  thrombospondin-1

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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