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GPC3 glypican 3 [ Antechinus flavipes (yellow-footed antechinus) ]

Gene ID: 127542846, updated on 24-Mar-2024

Summary

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Gene symbol
GPC3
Gene description
glypican 3
Gene type
protein coding
RefSeq status
MODEL
Organism
Antechinus flavipes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Metatheria; Dasyuromorphia; Dasyuridae; Antechinus
Orthologs
human mouse all
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Genomic context

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See GPC3 in Genome Data Viewer
Location:
chromosome: X
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2023_02 current AdamAnt_v2 (GCF_016432865.1) X NC_067404.1 (42017109..42720761)

Chromosome X - NC_067404.1Genomic Context describing neighboring genes Neighboring gene coiled-coil domain containing 160 Neighboring gene uncharacterized LOC127542464 Neighboring gene PC4 and SFRS1-interacting protein-like Neighboring gene glypican 4 Neighboring gene transfer RNA tryptophan (anticodon CCA)

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_067404.1 Chromosome X Reference AdamAnt_v2 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cell migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of canonical Wnt signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of protein localization to membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell surface IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in collagen-containing extracellular matrix IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
glypican-3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_016432865.1-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference AdamAnt_v2 Primary Assembly

Genomic

  1. NC_067404.1 Reference AdamAnt_v2 Primary Assembly

    Range
    42017109..42720761
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_051968697.1 → XP_051824657.1  glypican-3 isoform X2

  2. XM_051968696.1 → XP_051824656.1  glypican-3 isoform X1

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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