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CLEC16A C-type lectin domain containing 16A [ Antechinus flavipes (yellow-footed antechinus) ]

Gene ID: 127539119, updated on 24-Mar-2024

Summary

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Gene symbol
CLEC16A
Gene description
C-type lectin domain containing 16A
Gene type
protein coding
RefSeq status
MODEL
Organism
Antechinus flavipes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Metatheria; Dasyuromorphia; Dasyuridae; Antechinus
Orthologs
human mouse all
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Genomic context

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See CLEC16A in Genome Data Viewer
Location:
chromosome: 1
Exon count:
24
Annotation release Status Assembly Chr Location
RS_2023_02 current AdamAnt_v2 (GCF_016432865.1) 1 NC_067398.1 (300112573..300329615, complement)

Chromosome 1 - NC_067398.1Genomic Context describing neighboring genes Neighboring gene sperm-specific protein Phi-1-like Neighboring gene suppressor of cytokine signaling 1 Neighboring gene Dexi homolog Neighboring gene class II major histocompatibility complex transactivator

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_067398.1 Chromosome 1 Reference AdamAnt_v2 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in endosomal transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in endosome to lysosome transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of autophagosome maturation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endolysosome membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in late endosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein CLEC16A

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_016432865.1-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference AdamAnt_v2 Primary Assembly

Genomic

  1. NC_067398.1 Reference AdamAnt_v2 Primary Assembly

    Range
    300112573..300329615 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_051963155.1 → XP_051819115.1  protein CLEC16A isoform X4

  2. XM_051963146.1 → XP_051819106.1  protein CLEC16A isoform X3

  3. XM_051963162.1 → XP_051819122.1  protein CLEC16A isoform X5

  4. XM_051963137.1 → XP_051819097.1  protein CLEC16A isoform X2

  5. XM_051963128.1 → XP_051819088.1  protein CLEC16A isoform X1

  6. XM_051963173.1 → XP_051819133.1  protein CLEC16A isoform X6

Nucleotide Protein
Heading Accession and Version

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