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il1b interleukin 1, beta [ Ctenopharyngodon idella (grass carp) ]

Gene ID: 127520202, updated on 12-Sep-2024

Summary

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Gene symbol
il1b
Gene description
interleukin 1, beta
Gene type
protein coding
RefSeq status
MODEL
Organism
Ctenopharyngodon idella
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Xenocyprididae; Xenocypridinae; Ctenopharyngodon
Also known as
IL-1beta
Orthologs
zebrafish all
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Genomic context

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See il1b in Genome Data Viewer
Location:
chromosome: 10
Exon count:
14
Annotation release Status Assembly Chr Location
RS_2023_02 current HZGC01 (GCF_019924925.1) 10 NC_067229.1 (45847091..45860153)

Chromosome 10 - NC_067229.1Genomic Context describing neighboring genes Neighboring gene metal transporter CNNM4 Neighboring gene metal transporter CNNM3 Neighboring gene uncharacterized LOC127520206 Neighboring gene purine-rich element binding protein Bb Neighboring gene histone H2A.V

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_067229.1 Chromosome 10 Reference HZGC01 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Functional characterization of TNF-α in grass carp head kidney leukocytes: induction and involvement in the regulation of NF-κB signaling. Zhang A, et al. Fish Shellfish Immunol, 2012 Nov. PMID 22981915
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cytokine activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cellular response to lipopolysaccharide IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cytokine-mediated signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in immune response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in inflammatory response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in macrophage chemotaxis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in neutrophil activation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of gene expression IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of non-canonical NF-kappaB signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
interleukin-1 beta
Names
IL-1 beta

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_019924925.1-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference HZGC01 Primary Assembly

Genomic

  1. NC_067229.1 Reference HZGC01 Primary Assembly

    Range
    45847091..45860153
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_051908150.1 → XP_051764110.1  interleukin-1 beta isoform X3

  2. XM_051908148.1 → XP_051764108.1  interleukin-1 beta isoform X2

  3. XM_051908147.1 → XP_051764107.1  interleukin-1 beta isoform X1

  4. XM_051908149.1 → XP_051764109.1  interleukin-1 beta isoform X1

Nucleotide Protein
Heading Accession and Version

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